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feat: explore gene wise fdr #48

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feat: explore gene wise fdr #48

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3a621d6
feat: explore pairwise fdr diffs
drbh Aug 18, 2025
22b580e
fix: remove example
drbh Aug 18, 2025
5670427
fix: run formatter
drbh Aug 19, 2025
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2 changes: 2 additions & 0 deletions src/pdex/_single_cell.py
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Original file line number Diff line number Diff line change
Expand Up @@ -574,6 +574,7 @@ def _process_single_target_vectorized(

# Statistical tests across all genes simultaneously
p_values, statistics = _vectorized_ranksum_test_numba(X_target, X_ref)
pairwise_fdr = false_discovery_control(p_values, method="bh")

# Build results for all genes at once using vectorized operations
target_results = [
Expand All @@ -587,6 +588,7 @@ def _process_single_target_vectorized(
"fold_change": fc[i],
"p_value": p_values[i],
"statistic": statistics[i],
"pairwise_fdr": pairwise_fdr[i],
}
for i in range(len(gene_names))
]
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