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Add synthetic data generation functionality #60

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@ibevers ibevers commented Jun 14, 2024 •
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Adds convenient synthetic tabular data generation for Bridge2AI voice data with sdv.

ibevers and others added 30 commits June 14, 2024 12:15
@ibevers
Add synthetic RedCap data generation function
ff83244
@ibevers
Fix CLI bug and add evaluation function for synthetic data
405a0ef
@ibevers
Create version of prepare for synthetic data
331a252
@alistairewj
fixes while running on corpus 3
4cf8333
@ibevers
Comment out column conversion since this was done manually
17ec192
@ibevers
Add non-pydra iterative feature extraction
c3edca8
@ibevers
Add update columns flag
2d7d9ca
@ibevers
Add language code to transcribe to fix bug
5d65f26
@ibevers
Add update_column_names arg to tests
fb61fdc
@alistairewj
rework so non-parallel extraction works and verifies content
d07d229
@alistairewj
add command to validate a BIDS folder has all the extracted features
d5db59b
@alistairewj @ibevers
add command to validate a BIDS folder has all the extracted features
ef57f2a
@ibevers
Add try/except and retry for transcription
c8d099d
@ibevers
Refactor transcription and move inside try
14b53a2
@ibevers
Merge branch 'alistair/corpus_3' into corpus-3-release-fixes
70baeb7
@ibevers
Remove redundant validate_bids_data function
9589071
@ibevers
Remove vestigial test update_redcap_df_column_names
f00353e
@ibevers
Add labels to coded mapping for updating synthetic csv
366a04e
@ibevers
Update wav_path to wav_paths
21247a2
@ibevers
Merge branch 'synthetic-data' into corpus-3-release-fixes
603ced3
@ibevers
Merge pull request #87 from sensein/corpus-3-release-fixes
eac07e9 
Update Synthetic Data Branch
@ibevers
Merge branch 'corpus-3-release-fixes' of https://github.com/sensein/b…
184687b 
…2aiprep into corpus-3-release-fixes
@ibevers
Merge branch 'corpus-3-release-fixes' into synthetic-data
134b24a
@ibevers
Move synthetic data files to synthetic dir
911b925
@ibevers
Fix Pydra workflow
f44cb1c
@ibevers
Merge branch 'corpus-3-release-fixes' into synthetic-data
2b5601e
@ibevers
Add try/except for robustness when not connected to wifi
54673ea
@ibevers
Merge branch 'corpus-3-release-fixes' into synthetic-data
7b74a52
@ibevers
Separate synthesizer fit function from data generation
261b0b8
@ibevers
Update .gitignore
3928279
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3 participants

@ibevers @alistairewj