Update from update/software-2025-12-21

database/github/ASAFind/ASAFind-2/metadata.json

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+        "description": "ASAFind latest version, with options for graphical output and ppc protein prediction",
+        "created_at": "2025-03-10T10:11:56Z",
+        "updated_at": "2025-11-20T08:22:12Z",
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+            "eukaryotes",
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+            "plastid",
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+            "protein-translocation",
+            "sequence",
+            "signal-peptide",
+            "transit-peptide",
+            "chloroplast",
+            "mitochondria",
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+            "protein-targeting"
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database/github/AuReMe/emapper2gbk/metadata.json

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database/github/AuReMe/mpwt/metadata.json

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+        "description": "Pathway Tools multiprocessing wrapper (for PathoLogic).",
+        "created_at": "2018-12-11T09:01:00Z",
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+        "avatar": "https://avatars.githubusercontent.com/u/45785570?v=4"
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database/github/AuReMe/prolipipe/metadata.json

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+        "created_at": "2023-04-14T14:49:42Z",
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+        "avatar": "https://avatars.githubusercontent.com/u/45785570?v=4"
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+}

database/github/AyehBlk/RAPTOR/metadata.json

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+    "uid": "github/AyehBlk/RAPTOR",
+    "url": "https://github.com/AyehBlk/RAPTOR",
+    "data": {
+        "name": "RAPTOR",
+        "url": "https://github.com/AyehBlk/RAPTOR",
+        "full_name": "AyehBlk/RAPTOR",
+        "html_url": "https://github.com/AyehBlk/RAPTOR",
+        "private": false,
+        "description": "RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.",
+        "created_at": "2025-11-10T11:24:37Z",
+        "updated_at": "2025-12-18T14:53:04Z",
+        "clone_url": "https://github.com/AyehBlk/RAPTOR.git",
+        "homepage": "",
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+        "language": "Python",
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+        "license": {
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+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
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+            "login": "AyehBlk",
+            "type": "User"
+        },
+        "topics": [
+            "benchmarking",
+            "bulk-rna-seq",
+            "deseq2",
+            "differential-expression-analysis",
+            "edger",
+            "featurecounts",
+            "genomics",
+            "kallisto",
+            "limma-voom",
+            "machine-learning",
+            "pipeline-benchmarking",
+            "pipeline-comparison",
+            "python",
+            "rna-seq",
+            "rna-seq-pipeline",
+            "salmon",
+            "streamlit",
+            "transcriptomics"
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+        "timestamp": "2025-12-21 00:58:55.302485",
+        "avatar": "https://avatars.githubusercontent.com/u/157579333?v=4"
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database/github/BigDataBiology/macrel/metadata.json

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+    "uid": "github/BigDataBiology/macrel",
+    "url": "https://github.com/BigDataBiology/macrel",
+    "data": {
+        "title": "Macrel",
+        "url": "https://github.com/BigDataBiology/macrel",
+        "credit": [],
+        "tags": [
+            "metagenomic-sequencing-analysis",
+            "high-throughput-sequencing",
+            "genomics"
+        ],
+        "description": "Predict AMPs in (meta)genomes and peptides",
+        "name": "macrel",
+        "full_name": "BigDataBiology/macrel",
+        "html_url": "https://github.com/BigDataBiology/macrel",
+        "created_at": "2019-07-01T02:35:37Z",
+        "updated_at": "2025-11-24T07:04:29Z",
+        "clone_url": "https://github.com/BigDataBiology/macrel.git",
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+            "url": null,
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+            "biology",
+            "genomics",
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+        "timestamp": "2025-12-21 01:00:51.528496",
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database/github/C4dynamics/C4dynamics/metadata.json

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+        "description": "The Python framework for state-space modeling and algorithm development",
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database/github/Cavenfish/YetAnotherSimulationSuite.jl/metadata.json

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+        "updated_at": "2025-12-20T10:27:12Z",
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