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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    Python 527 260

  2. distributions distributions Public

    Makefile 5 11

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 29

  4. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 6 14 Updated Jan 12, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Jan 12, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 0 Updated Jan 12, 2026
  • qiime2 Public

    Source for the QIIME 2 Framework (Q2F).

    qiime2/qiime2’s past year of commit activity
    Python 527 BSD-3-Clause 260 66 (4 issues need help) 7 Updated Jan 9, 2026
  • library-catalog Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-catalog’s past year of commit activity
    0 BSD-3-Clause 9 1 1 Updated Jan 8, 2026
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 41 22 (2 issues need help) 1 Updated Jan 8, 2026
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 28 7 1 Updated Jan 7, 2026
  • q2-types Public
    qiime2/q2-types’s past year of commit activity
    Python 17 BSD-3-Clause 44 25 (2 issues need help) 3 Updated Jan 7, 2026
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 15 0 0 Updated Jan 4, 2026
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 21 8 0 Updated Jan 4, 2026

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