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Copilot AI commented Jan 9, 2026

Pull Request

DESCRIPTION GOES HERE

Before you submit your pull request, take a look at the following checklist. Many thanks for your contribution!

  • Title: Place Closes #<insert_issue_number> at the beginning of your PR title. Use the Edit button in the top-right if you need to update.
  • Linked Issue: Ensure the related issue is linked in the "Development Section" on the right-hand side.
  • First Contribution: If this is your first contribution, add yourself to the DESCRIPTION file.
  • Impact on Examples: If your updates impact any examples, review locally for warnings or errors in the impacted example pages.
  • Merge Conflicts: Developers should address any merge conflicts and merge upon successful review.
  • New Packages: If new packages were used, ensure they are included in the DESCRIPTION file's Imports section.
  • Updated Examples: If you added or updated an example, ensure it runs on the latest CRAN release versions of all packages used.
  • Testing Instructions: Provide instructions on how to test the code if necessary.

Section index pages contained only titles. This adds comprehensive landing pages to help users navigate examples.

Changes

Each section's index.qmd now includes:

  • Overview - Purpose and standards context (e.g., CDISC compliance for SDTM/ADaM)
  • Examples catalog - Organized list with descriptions and links to individual examples
  • Key packages - Links to relevant pharmaverse package documentation
  • Getting started - What to expect in each example

Sections updated

  • SDTM - 3 domain examples (DM, AE, VS)
  • ADaM - 7 dataset examples (ADSL, ADAE, ADVS, ADRS, ADTTE, ADPC, ADPPK)
  • TLG - 3 output types (demographic, adverse events, pharmacokinetic)
  • Documents - 2 generators (DOCX, PowerPoint AutoSlider)
  • Interactive - Teal framework applications
  • Logs - Logging implementation for audit trails
  • eSubmission - ADRG and regulatory submission preparation

Consistent structure across all landing pages for easier navigation.

Original prompt

This section details on the original issue you should resolve

<issue_title>Add landing page for each section</issue_title>
<issue_description>Add a landing page for each section e.g. SDTM, ADaM, TLG etc.</issue_description>

Comments on the Issue (you are @copilot in this section)


✨ Let Copilot coding agent set things up for you — coding agent works faster and does higher quality work when set up for your repo.

Co-authored-by: jeffreyad <112705781+jeffreyad@users.noreply.github.com>
Copilot AI changed the title [WIP] Add landing pages for each section Add landing pages for each section (SDTM, ADaM, TLG, Documents, Interactive, Logs, eSubmission) Jan 9, 2026
Copilot AI requested a review from jeffreyad January 9, 2026 21:31
@jeffreyad jeffreyad changed the title Add landing pages for each section (SDTM, ADaM, TLG, Documents, Interactive, Logs, eSubmission) Closes #120 Add landing pages for each section (SDTM, ADaM, TLG, Documents, Interactive, Logs, eSubmission) Jan 9, 2026
@jeffreyad jeffreyad marked this pull request as ready for review January 14, 2026 17:21
@bms63
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bms63 commented Jan 14, 2026

Ohh looking fancy!!

Any chance we could add sub TOC for the different tabling package sections? would that help addresss #115 ??

image

@jeffreyad
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@bms63 yes, added more detail to distinguish the TLG approaches also discussed in #122 and #115

@jeffreyad jeffreyad mentioned this pull request Jan 14, 2026
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Wow @jeffreyad - you went above and beyond expectations here! Looks really cool and hope these review comments are useful

jeffreyad and others added 4 commits January 20, 2026 09:17
Co-authored-by: Ross Farrugia <82581364+rossfarrugia@users.noreply.github.com>
Co-authored-by: Ross Farrugia <82581364+rossfarrugia@users.noreply.github.com>
Co-authored-by: Ross Farrugia <82581364+rossfarrugia@users.noreply.github.com>
@jeffreyad jeffreyad requested review from ddsjoberg and removed request for jeffreyad January 20, 2026 16:11
jeffreyad and others added 5 commits January 20, 2026 10:24
Co-authored-by: Ross Farrugia <82581364+rossfarrugia@users.noreply.github.com>
Co-authored-by: Ross Farrugia <82581364+rossfarrugia@users.noreply.github.com>
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Add landing page for each section

4 participants