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@ReproNim Center for Reproducible Neuroimaging Computation

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    106 repositories

    • containers

      Public
      Containers "distribution" for reproducible neuroimaging
      Roff
      •
      Apache License 2.0
      •16•30•40•6•Updated Dec 23, 2025Dec 23, 2025

    • reprostim

      Public
      Automated capture of audio-visual stimuli into BIDS datasets
      reproducible-researchpsychologyneuroimaging
      Python
      •4•6•45•1•Updated Dec 22, 2025Dec 22, 2025

    • hbcd-loris2reproschema

      Public
      HBCD LORIS format to ReproSchema format
      Python
      •
      MIT License
      •1•0•0•21•Updated Dec 22, 2025Dec 22, 2025

    • neurodocker

      Public
      Generate custom Docker and Singularity images, and minimize existing containers
      linuxdockersciencedockerfilereproducible-researchcontainersneurosciencesingularity-containernipypeapptainer
      Python
      •
      Apache License 2.0
      •96•353•7•9•Updated Dec 22, 2025Dec 22, 2025

    • repronim.org

      Public
      WiP for a replacement website
      HTML
      •
      MIT License
      •9•0•23•2•Updated Dec 17, 2025Dec 17, 2025

    • reproschema-py

      Public
      Python
      •
      Apache License 2.0
      •10•2•15•4•Updated Dec 8, 2025Dec 8, 2025

    • ants_seg_to_nidm

      Public
      ANTS-based structural segmentation exporter to NIDM
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • segstats_jsonld

      Public
      Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
      brainweb
      Python
      •
      MIT License
      •8•1•9•2•Updated Nov 30, 2025Nov 30, 2025

    • stuff2NIDM

      Public
      Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
      Python
      •
      MIT License
      •2•1•1•1•Updated Nov 18, 2025Nov 18, 2025

    • ReproInventory

      Public
      A repo for developing the ReproNim inventory of training resources.
      TypeScript
      •
      MIT License
      •6•5•5•0•Updated Oct 2, 2025Oct 2, 2025

    • reproschema

      Public
      A standardized form generation and data collection schema to harmonize results by design across projects.
      schemainteroperabilitystandardizing-assessmentsclinical-assessments
      Python
      •
      Other
      •24•18•16•7•Updated Oct 1, 2025Oct 1, 2025

    • reproman

      Public
      ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
      Python
      •
      Other
      •14•24•158•6•Updated Sep 26, 2025Sep 26, 2025

    • reproschema-protocol-cookiecutter

      Public
      A cookiecutter for reproschema protocols.
      Python
      •1•0•1•1•Updated Sep 20, 2025Sep 20, 2025

    • FAIR_neuroimaging_with_NIDM

      Public
      FAIR neuroimaging with the Neuroimaging Data Model and PyNIDM
      Shell
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • reproschema-ui

      Public
      UI to render ReproSchema based protocols and assessments.
      hacktoberfestjsonldform-ui
      Vue
      •
      Other
      •20•3•46•3•Updated Aug 25, 2025Aug 25, 2025

    • simple2_NIDM_examples

      Public
      ReproNim simple2 NIDM files for ABIDE/ADHD200 available from datalad
      Shell
      •15•3•2•3•Updated Aug 14, 2025Aug 14, 2025

    • repronim.github.io

      Public
      HTML
      •
      GNU General Public License v3.0
      •11•3•24•0•Updated Aug 13, 2025Aug 13, 2025

    • reprozip

      Public
      ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •35•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • reproschema-server

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • reproschema2cde

      Public
      Python
      •
      MIT License
      •1•0•1•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-demo-protocol

      Public
      A demo protocol for the ReproSchema paper
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-agents

      Public
      multi-agent framework for reproschema
      MIT License
      •1•0•0•0•Updated Jul 27, 2025Jul 27, 2025

    • reproschema-library

      Public
      Python
      •
      Apache License 2.0
      •12•8•5•0•Updated Jul 27, 2025Jul 27, 2025

    • babs-demo-ohbm2025

      Public
      A demo for OHBM 2025 educational course on BABS
      Python
      •
      MIT License
      •1•3•0•0•Updated Jun 23, 2025Jun 23, 2025

    • hbcd-redcap2rs

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 1, 2025Jun 1, 2025

    • OpenNeuroDerivatives-NIDM

      Public
      Dockerfile
      •0•1•5•0•Updated May 19, 2025May 19, 2025

    • SumarizeFmriprep

      Public
      A script to generate a session summary from a fmriprep* (fmriprep-babies, nibabies, fmriprep, etc.) analysis
      Shell
      •
      MIT License
      •1•1•4•0•Updated May 19, 2025May 19, 2025

    • reproin

      Public
      A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
      Shell
      •
      MIT License
      •15•49•39•1•Updated May 12, 2025May 12, 2025

    • module-intro

      Public
      Module i: An Introduction to Reproducible Neuroimaging training module
      JavaScript
      •
      Other
      •4•0•3•0•Updated May 9, 2025May 9, 2025

    • reproflow-data-sync

      Public
      DataLad dataset with all samples of recorded "ReproEvents", "ReproStim", etc data for purpose of calibration and establishing processing
      Python
      •1•0•0•1•Updated May 7, 2025May 7, 2025