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@HumanCellAtlas Human Cell Atlas

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    121 repositories

    • ingest-validator-js

      Public
      Javascript validator for HCA metadata
      JavaScript
      •
      Apache License 2.0
      •5•3•1•40•Updated Jan 2, 2026Jan 2, 2026

    • metadata-schema

      Public
      This repo is for the metadata schemas associated with the HCA
      Python
      •
      Apache License 2.0
      •32•69•86•63•Updated Dec 30, 2025Dec 30, 2025

    • matrix-service

      Public
      DCP Expression Matrix Service
      Python
      •
      MIT License
      •3•12•31•322•Updated Dec 28, 2025Dec 28, 2025

    • data-monitoring-dashboard

      Public
      Python
      •0•2•9•61•Updated Dec 26, 2025Dec 26, 2025

    • data-consumer-vignettes

      Public
      Simple walk-throughs of interacting with the DCP as a downstream data consumer.
      Jupyter Notebook
      •
      MIT License
      •4•17•25•104•Updated Dec 15, 2025Dec 15, 2025

    • ingest-accessioner

      Public
      Scripts for Ingest Accessioning Service
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Dec 14, 2025Dec 14, 2025

    • upload-service

      Public
      DCP Ingestion File Upload Service
      Python
      •
      MIT License
      •3•4•26•223•Updated Dec 14, 2025Dec 14, 2025

    • cloud-blobstore

      Public
      Simple API that abstracts out differences between the blobstores across different cloud providers.
      Python
      •
      MIT License
      •1•7•1•10•Updated Dec 14, 2025Dec 14, 2025

    • metadata-schema-publisher

      Public
      Script for creating a repo of schemas in response to Github commits
      Python
      •2•1•0•35•Updated Dec 14, 2025Dec 14, 2025

    • logs

      Public
      Infrastructure for centralizing and indexing logs
      Python
      •
      MIT License
      •1•2•3•157•Updated Dec 14, 2025Dec 14, 2025

    • ingest-broker-api

      Public
      RESTful API for the Ingest Broker
      JavaScript
      •
      Apache License 2.0
      •1•0•0•3•Updated Dec 13, 2025Dec 13, 2025

    • ingest-central

      Public
      Ingest Central is the hub repository for the ingest service
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•203•7•Updated Dec 13, 2025Dec 13, 2025

    • ingest-staging-manager

      Public
      Client for handling the creation of staging areas triggered by the ingest service
      Python
      •
      Apache License 2.0
      •0•0•0•3•Updated Dec 12, 2025Dec 12, 2025

    • query-service

      Public
      Prototype implementation of the DCP Query Service, a metadata search engine for HCA
      sqlpostgresqlaurorajsonbhcadcpmetadata-searchhumancellatlas
      Python
      •
      MIT License
      •1•7•48•79•Updated Dec 12, 2025Dec 12, 2025

    • connexion

      Public
      Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support
      Python
      •
      Other
      •779•0•0•11•Updated Dec 12, 2025Dec 12, 2025

    • dcp-cli

      Public
      DEPRECATED - HCA Data Coordination Platform Command Line Interface
      Python
      •
      MIT License
      •6•6•48•13•Updated Dec 12, 2025Dec 12, 2025

    • falcon

      Public
      The workflow starter of secondary analysis service
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•34•Updated Dec 12, 2025Dec 12, 2025

    • matrix_semantic_map

      Public
      Specification for a JSON schema to map expression matrix annotations to ontology terms
      Python
      •
      Apache License 2.0
      •1•1•1•4•Updated Dec 12, 2025Dec 12, 2025

    • secondary-analysis

      Public
      Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•124•146•Updated Dec 11, 2025Dec 11, 2025

    • sctools

      Public
      Utilities for large scale distributed single cell data processing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•24•13•30•Updated Dec 11, 2025Dec 11, 2025

    • dcp-diag

      Public
      Development and operations diagnostic tools and libraries
      Python
      •
      MIT License
      •0•2•6•29•Updated Dec 11, 2025Dec 11, 2025

    • metadata-spreadsheet-tools

      Public
      Tools for generating metadata spreadsheets
      Python
      •
      Apache License 2.0
      •0•0•1•8•Updated Dec 11, 2025Dec 11, 2025

    • data-store

      Public
      Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
      hcaprod
      Python
      •
      Other
      •6•41•212•92•Updated Dec 11, 2025Dec 11, 2025

    • status-api

      Public
      Return build and application status badges
      Python
      •
      MIT License
      •0•0•0•20•Updated Dec 11, 2025Dec 11, 2025

    • lira

      Public
      Notification listener for secondary analyses
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•0•34•Updated Dec 10, 2025Dec 10, 2025

    • dcplib

      Public
      A library of modules shared among multiple Data Coordination Platform components
      Python
      •
      MIT License
      •2•4•8•2•Updated Dec 10, 2025Dec 10, 2025

    • fusillade

      Public
      Federated User Identity Login & Access Decision Engine
      aws-iamaccess-decision-engine
      Python
      •
      Other
      •0•8•33•69•Updated Dec 9, 2025Dec 9, 2025

    • ingest-fastq-validator

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•15•Updated Dec 9, 2025Dec 9, 2025

    • zentool

      Public
      CLI tool for working with ZenHub / GitHub / Google Sheets
      Python
      •
      MIT License
      •0•6•0•3•Updated Dec 8, 2025Dec 8, 2025

    • bronze

      Public
      A minimal alarm that reads data from Google Sheets and alerts people via Slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•1•4•Updated Dec 8, 2025Dec 8, 2025