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Restore reuse compliance across the repo. This does include new planning documents because it was created from a feature branch, but that is not the focus of this PR.

- Documented integration architecture for CocoIndex, including trait abstraction layer and optional runtime integration.
- Evaluated component selection between ast-grep and CodeWeaver, deciding to use existing ast-grep components for MVP.
- Established API protocol strategy, opting for a hybrid RPC over HTTP/WebSockets due to Cloudflare Workers constraints.
- Designed a hybrid relational architecture for graph database layer with in-memory acceleration.
- Selected WebSocket as primary real-time protocol with Server-Sent Events as fallback.
- Organized crate structure to extend existing Thread workspace with new graph-focused crates.
- Implemented multi-tier conflict detection strategy for progressive feedback.
- Developed storage backend abstraction pattern to support multiple backends with optimizations.
- Ongoing research on best practices for Rust WebAssembly, content-addressed caching, and real-time collaboration architecture.
Copilot AI review requested due to automatic review settings January 11, 2026 19:44
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Sorry @bashandbone, your pull request is larger than the review limit of 150000 diff characters

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Review the following changes in direct dependencies. Learn more about Socket for GitHub.

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Updatedcc@​1.2.51 ⏵ 1.2.529810093100100

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Pull request overview

This pull request restores REUSE compliance by removing authors fields from Cargo.toml files and adds comprehensive planning documentation for a new Real-Time Code Graph Intelligence feature (001-realtime-code-graph).

Changes:

  • Removes authors fields from 3 Cargo.toml files for REUSE compliance
  • Adds extensive specification and planning documents for feature 001-realtime-code-graph
  • Updates development tooling configuration (mise.toml, hk.pkl)

Reviewed changes

Copilot reviewed 145 out of 147 changed files in this pull request and generated no comments.

Show a summary per file
File Description
xtask/Cargo.toml Removes authors field for REUSE compliance
crates/wasm/Cargo.toml Removes authors field for REUSE compliance
crates/services/Cargo.toml Removes authors field for REUSE compliance
specs/001-realtime-code-graph/* Adds comprehensive feature specification, research, contracts, and planning documents
mise.toml Updates development environment configuration
hk.pkl Updates git hooks and linter configuration
scripts/README-llm-edit.md Adds REUSE license header

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@bashandbone bashandbone merged commit c146c69 into main Jan 11, 2026
14 of 18 checks passed
@bashandbone bashandbone deleted the restore-reuse-compliance branch January 11, 2026 19:47
bashandbone added a commit that referenced this pull request Jan 30, 2026
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bashandbone added a commit that referenced this pull request Jan 31, 2026
…bilities into Thread, providing dataflow driven ETL pipeline management (#48)

* feat: add initial specification and quality checklist for Real-Time Code Graph Intelligence

* Add research findings for Real-Time Code Graph Intelligence

- Documented integration architecture for CocoIndex, including trait abstraction layer and optional runtime integration.
- Evaluated component selection between ast-grep and CodeWeaver, deciding to use existing ast-grep components for MVP.
- Established API protocol strategy, opting for a hybrid RPC over HTTP/WebSockets due to Cloudflare Workers constraints.
- Designed a hybrid relational architecture for graph database layer with in-memory acceleration.
- Selected WebSocket as primary real-time protocol with Server-Sent Events as fallback.
- Organized crate structure to extend existing Thread workspace with new graph-focused crates.
- Implemented multi-tier conflict detection strategy for progressive feedback.
- Developed storage backend abstraction pattern to support multiple backends with optimizations.
- Ongoing research on best practices for Rust WebAssembly, content-addressed caching, and real-time collaboration architecture.

* feat: Add spec and planning documents for realtime codegraph feat

* Remove workspace author and edition fields from Cargo.toml files in services, utils, wasm, and xtask crates

* Update rapidhash implementation in thread-utils (#45)

* Update thread-utils to use latest rapidhash API

- Update `hash_help.rs` to use `rapidhash::v3` for stable file/byte hashing.
- Update `hash_help.rs` to use `rapidhash::fast` for `RapidMap`/`RapidSet` (optimized for speed).
- Fix build issues in workspace crates (authors, dependency conflicts) to allow tests to run.

* Initial plan

* Add comprehensive tests for hash_help module

Co-authored-by: bashandbone <89049923+bashandbone@users.noreply.github.com>

* Replace magic numbers with named constants in tests

Co-authored-by: bashandbone <89049923+bashandbone@users.noreply.github.com>

* Update thread-utils to use latest rapidhash API

- Update `hash_help.rs` to use `rapidhash::v3` for stable file/byte hashing.
- Update `hash_help.rs` to use `rapidhash::fast` for `RapidMap`/`RapidSet` (optimized for speed).
- Add tests for hashing functions in `crates/utils/src/hash_tests.rs`.
- Fix build issues in workspace crates (authors, dependency conflicts) to allow tests to run.

* Update crates/utils/src/hash_help.rs

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Signed-off-by: Adam Poulemanos <89049923+bashandbone@users.noreply.github.com>

---------

Signed-off-by: Adam Poulemanos <89049923+bashandbone@users.noreply.github.com>
Co-authored-by: google-labs-jules[bot] <161369871+google-labs-jules[bot]@users.noreply.github.com>
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: bashandbone <89049923+bashandbone@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

* chore: Update dependencies and remove unused configuration files

* chore: Update dependencies and remove unused configuration files

* fix: cargo-deny syntax failure

* feat: finalize feature planning docs

* chore: scaffolded 001 phase 0

* chore: update workspace packages

* feat: Integrate `flow` crate, enable `ast-grep` dev dependencies, and refactor `services` re-exports to be conditional.

* feat: Replace placeholder `()` stub types with concrete, feature-gated implementations for AST-related types and introduce generics to `ThreadService` while updating dependencies and removing unused WASM result types.

* refactor: remove unused imports from flow crates and refine benchmark syntax.

* feat: Implement actual AST parsing and structured metadata extraction for the `ThreadParse` function, utilizing a new conversion module and enabling specific language support.

* feat: vendored cocoindex. As we began to integrate it became clear that we needed more control. With vendoring, we can also eliminate its many heavy dependencies that we are not using. Its dataflow design will make it feasible to integrate future updates periodically

* chor: for vendored cocoindex, Remove Python integration, associated components, and various Rust operation sources/targets, while updating Rust build configurations and core modules.

* refactor: abstract vendored cocoindex with a execution context with a new trait, remove Python utility imports, and remove the dumper module.

* clean: remove outdated build output and error log files.

* chore: update implementation plan to reflect vendoring decision

* feat: implement ReCoco integration and add D1 support to ThreadFlowBuilder

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�[38;5;238m   2�[0m �[38;5;238m│�[0m
�[38;5;238m   3�[0m �[38;5;238m│�[0m �[38;2;248;248;242mImplement comprehensive performance optimizations including content-addressed�[0m
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�[38;5;238m   5�[0m �[38;5;238m│�[0m �[38;2;248;248;242mcost reduction through blake3 fingerprinting and 2-4x speedup via rayon.�[0m
�[38;5;238m   6�[0m �[38;5;238m│�[0m
�[38;5;238m   7�[0m �[38;5;238m│�[0m �[38;2;248;248;242mFeatures:�[0m
�[38;5;238m   8�[0m �[38;5;238m│�[0m �[38;2;248;248;242m- Blake3 fingerprinting: 346x faster than parsing (425ns vs 147µs)�[0m
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�[38;5;238m  13�[0m �[38;5;238m│�[0m �[38;2;248;248;242mPerformance improvements:�[0m
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�[38;5;238m  19�[0m �[38;5;238m│�[0m �[38;2;248;248;242mImplementation:�[0m
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�[38;5;238m  17�[0m �[38;5;238m│�[0m �[38;5;231m- Realistic workload scenarios (small/medium/large projects)�[0m
�[38;5;238m  18�[0m �[38;5;238m│�[0m �[38;5;231m- AST parsing throughput benchmarks�[0m
�[38;5;238m  19�[0m �[38;5;238m│�[0m �[38;5;231m- Rule matching performance benchmarks�[0m
�[38;5;238m  20�[0m �[38;5;238m│�[0m �[38;5;231m- Pattern compilation caching benchmarks�[0m
�[38;5;238m  21�[0m �[38;5;238m│�[0m �[38;5;231m- Parallel processing benchmarks (feature-gated)�[0m
�[38;5;238m  22�[0m �[38;5;238m│�[0m �[38;5;231m- Cache hit/miss pattern benchmarks (feature-gated)�[0m
�[38;5;238m  23�[0m �[38;5;238m│�[0m
�[38;5;238m  24�[0m �[38;5;238m│�[0m �[38;5;231mPerformance Regression Tests:�[0m
�[38;5;238m  25�[0m �[38;5;238m│�[0m �[38;5;231m- Fingerprint speed: <5µs for small files (60-80% better than threshold)�[0m
�[38;5;238m  26�[0m �[38;5;238m│�[0m �[38;5;231m- Parse speed: <1ms for small files (25-80% better than threshold)�[0m
�[38;5;238m  27�[0m �[38;5;238m│�[0m �[38;5;231m- Serialization: <500µs (50-80% better than threshold)�[0m
�[38;5;238m  28�[0m �[38;5;238m│�[0m �[38;5;231m- End-to-end pipeline: <100ms (50-75% better than threshold)�[0m
�[38;5;238m  29�[0m �[38;5;238m│�[0m �[38;5;231m- Memory efficiency: Zero leaks detected across 100+ iterations�[0m
�[38;5;238m  30�[0m �[38;5;238m│�[0m �[38;5;231m- Comparative performance: Fingerprint 15-50x faster than parse�[0m
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�[38;5;238m  33�[0m �[38;5;238m│�[0m �[38;5;231m- Performance regression job runs on all PRs and main�[0m
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�[38;5;238m  36�[0m �[38;5;238m│�[0m �[38;5;231m- 90-day artifact retention for baseline tracking�[0m
�[38;5;238m  37�[0m �[38;5;238m│�[0m �[38;5;231m- Integrated with CI success gate�[0m
�[38;5;238m  38�[0m �[38;5;238m│�[0m
�[38;5;238m  39�[0m �[38;5;238m│�[0m �[38;5;231mTest Results:�[0m
�[38;5;238m  40�[0m �[38;5;238m│�[0m �[38;5;231m- 100% test pass rate (13/13 tests passing)�[0m
�[38;5;238m  41�[0m �[38;5;238m│�[0m �[38;5;231m- All thresholds exceeded by 25-80% margin�[0m
�[38;5;238m  42�[0m �[38;5;238m│�[0m �[38;5;231m- Zero performance regressions detected�[0m
�[38;5;238m  43�[0m �[38;5;238m│�[0m �[38;5;231m- Zero memory leaks detected�[0m
�[38;5;238m  44�[0m �[38;5;238m│�[0m �[38;5;231m- Constitutional compliance validated�[0m
�[38;5;238m  45�[0m �[38;5;238m│�[0m
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�[38;5;238m  54�[0m �[38;5;238m│�[0m �[38;5;231m- CPU: Core count saturation (mitigation: horizontal scaling)�[0m
�[38;5;238m  55�[0m �[38;5;238m│�[0m �[38;5;231m- D1 latency: 100ms p99 under load (mitigation: caching, batching)�[0m
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�[38;5;238m  59�[0m �[38;5;238m│�[0m �[38;5;231m- LOAD_TEST_REPORT.md: Comprehensive analysis with metrics�[0m
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�[38;5;238m─────┴──────────────────────────────────────────────────────────────────────────�[0m

* �[38;5;238m─────┬──────────────────────────────────────────────────────────────────────────�[0m
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�[38;5;238m   1�[0m �[38;5;238m│�[0m �[38;5;231mfeat(incremental): add core data structures for incremental updates�[0m
�[38;5;238m   2�[0m �[38;5;238m│�[0m
�[38;5;238m   3�[0m �[38;5;238m│�[0m �[38;5;231mImplement Phase 1 foundation following ReCoco's FieldDefFingerprint pattern:�[0m
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* �[38;5;238m─────┬──────────────────────────────────────────────────────────────────────────�[0m
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�[38;5;238m   4�[0m �[38;5;238m│�[0m �[38;5;231mruntime backend selection via factory pattern. Enables deployment-specific�[0m
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�[38;5;238m  38�[0m �[38;5;238m│�[0m �[38;5;231m- Test-first development followed (Principle III)�[0m
�[38;5;238m  39�[0m �[38;5;238m│�[0m �[38;5;231m- Storage/cache requirements met (Principle VI)�[0m
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�[38;5;238m  41�[0m �[38;5;238m│�[0m �[38;5;231mCo-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>�[0m
�[38;5;238m─────┴──────────────────────────────────────────────────────────────────────────�[0m

* fix(incremental): add Debug trait to storage backends for testing

Add Debug trait bound to StorageBackend trait and derive Debug for all
backend implementations to support integration testing patterns.

Changes:
- StorageBackend trait: Add std::fmt::Debug trait bound
- InMemoryStorage: Derive Debug
- PostgresIncrementalBackend: Derive Debug
- D1IncrementalBackend: Derive Debug + Clone

This enables Box<dyn StorageBackend> to implement Debug, which is
required for test assertions and error reporting in integration tests.

All 81 incremental tests pass with --all-features.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix: resolve pre-existing codebase issues

Two categories of fixes:

1. **Add fingerprint feature to recoco-utils** (thread-services):
   - Enable fingerprint module in recoco-utils dependency
   - Fixes compilation errors in conversion.rs and types.rs
   - Allows thread-services to use blake3 fingerprinting

2. **Rename typ parameter to value_type** (benchmarks):
   - Fix typos check flagging 'typ' as spelling error
   - More descriptive parameter name in test_field_schema()
   - Affects: benches/d1_profiling.rs

3. **Fix marshalling → marshaling** (documentation):
   - American spelling consistency in claudedocs

All changes are non-functional fixes addressing tooling warnings.
Workspace now compiles cleanly: cargo check --workspace passes.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* feat(flow): finalize thread-flow crate creation, final validation, docs, and linting

* Apply suggestions from code review

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Signed-off-by: Adam Poulemanos <89049923+bashandbone@users.noreply.github.com>

* fix: gitignore

* chore: remove .gemini directory and add to gitignore

* fix: add files meant for gitignore to .gitignore

* fix: remove duplicate dependency 'simdeez' from Cargo.toml

---------

Signed-off-by: Adam Poulemanos <89049923+bashandbone@users.noreply.github.com>
Co-authored-by: google-labs-jules[bot] <161369871+google-labs-jules[bot]@users.noreply.github.com>
Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
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