Identify putative introns in RNA-Seq alignments in BAM/SAM alignments. This works with both short and long-read RNA sequencing.
intronProspector- calls introns from SAM/BAM filesintronProspectorMerge- merges output from multipleintronProspectorruns or convert between formats
Usage is described in the intronProspector manual page and intronProspectorMerge manual page
The only dependencies are htslib and a modern C++ compiler
This code is derived from the Griffith Lab's excellent
RegTools package.