Drop 1KGP aggregate from population list #158
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
A failure of the
microhapdb/tests/test_frequency.py::test_counts_randomtest today uncovered an issue.In #155, aggregation of all 1000 Genomes Project data into a single global superpopulation (1KGP) was discontinued. (1KGP was kept around as a label for the average of the 26 global population groups when calculating Ae.) However, 1KGP is still listed as an entry in the
populationstable, causing this test to fail intermittently whenever that entry is chosen for a random test.This PR removes 1KGP from the populations table and updates all of the tests accordingly.