Note
This tool is not affiliated with, endorsed by, or approved by Integrated DNA Technologies (IDT)
$ pip install bed2idt Usage:
$ bed2idt [OPTIONS] COMMAND [ARGS]...Options:
--version--install-completion: Install completion for the current shell.--show-completion: Show completion for the current shell, to copy it or customize the installation.--help: Show this message and exit.
Commands:
platestubes
Usage:
$ bed2idt plates [OPTIONS] BEDFILEArguments:
BEDFILE: The path to the bed file [required]
Options:
--output FILE: The output location of the file. Defaults to output.xlsx [default: output.xlsx]--splitby [pool|ref|ref_pool|none]: Should the primers be split across different plate [default: pool]--fillby [rows|cols]: How should the plate be filled [default: cols]--plateprefix TEXT: The prefix used in naming sheets in the excel file [default: plate]--force / --no-force: Override the output directory--randomise / --no-randomise: Randomise the order of primers within a plate [default: no-randomise]--platesize [96|384]: The size of the plate to use [default: 96]--help: Show this message and exit.
Usage:
$ bed2idt tubes [OPTIONS] BEDFILEArguments:
BEDFILE: The path to the bed file [required]
Options:
--output FILE: The output location of the file. Defaults to output.xlsx [default: output.xlsx]--scale [25nm|100nm|250nm|1um|5um|10um]: The concentration of the primers [default: 25nm]--purification [STD|PAGE|HPLC|IEHPLC|RNASE|DUALHPLC|PAGEHPLC]: The purification of the primers [default: STD]--force / --no-force: Override the output directory--help: Show this message and exit.