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Lab Meeting Schedule
namcnabb edited this page Apr 18, 2022
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Mondays 3:00-5:00 PM
- 03/28/2022: Catch up & discuss goals for the quarter
- 04/04/2022: Tony T - Pilot experiment and plans for Rivulus colony
- 04/18/2022: Kaho - TBD
- 05/02/2022: Brief lab safety; Tony G - TBD
- 05/16/2022: Nicole - TBD
- 05/23/2022: Uzezi - TBD
Wednesdays 12:30-2:30PM
- 01/05/2022: Catch up & discuss goals for the quarter
- 01/12/2022: Joanna - Take-homes messages from the class "Professional Academic Development"
- 01/26/2022: Tony T- T32 Proposal Overview (K.mar as a model to inform human health)
- 02/09/2022: Tony G - TBD
- 02/23/2022: Uzezi - Personal websites
- 03/09/2022: Nicole - Winter RI trip + how to use EthoVision to track & analyze behavior data
Thursdays 12:30-2:30PM
- 09/30/2021: Tony T - Personal Websites and Task management/ Organization
- 10/14/2021: Accomplishments, goals, expectations
- 10/28/2021: Tony G. - Pac herring embryonic oil exposure updates (with halloween heatmaps)
- 11/04/2021: Jen - Troubleshooting discussion + CV's
- 11/18/2021: Joanna - Delta smelt updates?
- 12/02/2021: Nicole - Summer data presentation
Wednesdays 10:00AM-12:00PM (remote video conferencing)
- 04/07/2021: Joe - Project updates
- 04/14/2021: Lightning journal club
- 04/21/2021: Maddie - Project or paper discussion
- 04/28/2021: Professional Development: Joe's job interview experience and LinkedIn sharing
- 05/05/2021: Joanna - Project updates
- 05/12/2021: Tony T - Lit review | Plans for the summer
- 05/19/2021: Nicole - Asking Different Questions Program
- 05/26/2021: Melina - Article/chapter discussion (integrating environmental justice concerns into environmental health sciences practices)
- 06/02/2021: Tony G TBD
Mondays 10:00AM-12:00PM (remote video conferencing)
Wednesdays during weeks with Monday holidays
- 01/04/2021: Catch up & discuss goals for the quarter
- 01/11/2021: Joanna (Websites Round 2)
- 01/20/2021 (WED 2:00pm): Career talk with Dr. Tracie Baker
- 01/25/2021: Paper Discussions: Week 1 papers and discussion questions found on here: https://rcn-ecs.github.io/2021_readings/
- 02/01/2021: Joe: Paper discussion on "Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci" followed by an analysis of eLife's open access reviews. Paper here and its reviews here
- 02/08/2021: Tony T. - Rotation talk
- 02/17/2021 (WED 5:15pm): Jane - Policy fellowship
- 02/22/2021: Nicole - Transgenerational Inheritance
- 03/01/2021: Melina - Research talk
- 03/08/2021: Tony G Research Talk
Fridays 11:00AM-12:30PM (remote video conferencing)
- 10/09/2020: Lab personnel policy; Nicole - Practice poster lightning talk
- 10/16/2020: CANCELED (delta smelt experiment)
- 10/23/2020: Updates on accomplishments, struggles, plans; Writing lab code of conduct
- 10/30/2020: Jane - exit seminar
- 11/06/2020: Joanna - Website Design: https://docs.google.com/document/d/1ZwXvWm4JnqmL2KSQVoKbiRez-KeHrNIzOdpYMkXi_eI/edit?usp=sharing
- 11/13/2020: Joe - Herring updates and introduction to killifish gene expression evolution project
- 11/20/2020: Matt - space trees
- 11/27/2020: Thanksgiving Break
- 12/04/2020: Tony G. - Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed
- 12/11/2020: Tony T. - Rotation talk & previous work
Wednesday 11:30-1:00PM (remote video conferencing)
- 06/09/2020: Joanna Lightening Talk, Diversity Discussion
- 06/17/2020: Tony & Andrew Lightning Talk,
- 06/24/2020: Matt Lightning Talk, Tony: The need for an evolutionary approach to ecotoxicology & Genome editing retraces the evolution of toxin resistance in the monarch butterfly
- 07/01/2020: Cancelled
- 07/08/2020: Maddie Lightning Talk. Lab members give updates on their summer research
- 07/15/2020: Cancelled
- 07/22/2020: Nicole: Lightning Talk, Joe: Diversity and Inclusion
- 07/29/2020: Cancelled
- 08/26/2020: Matt: evolving fish project
- 09/09/2020: Joanna: project talk
- 09/23/2020: Joe: project talk
Wednesdays 10:30-12:00PM (remote video conferencing)
- 04/08/2020: Sara Presentation
- 04/15/2020: Website design
- 04/22/2020: Jane
- 04/29/2020: Nicole Practice chalk talk
- 05/06/2020: Tony data presentation
- 05/13/2020: Sara - cover letter writing
- 05/20/2020: Jane Lightning Talk, Nicole TBD
- 05/27/2020: Haley + Picasso Lightning Talk, Jane: Evolution, not transgenerational plasticity, explains the adaptive divergence of acorn ant thermal tolerance across an urban–rural temperature cline
- 06/03/2020: Sara + Jen Lightning Talk, Matt space-trees
Wednesdays 10-11:30AM
- 01/08/2020: Matt Poster Presentation
- 01/15/2020: Nicole Paper: Ocean acidification does not impair the behaviour of coral reef fishes
- 01/22/2020: Tony Resume/CV workshop
- 01/29/2020:Jane practice talk for Grad Slam, workshop on science communication
- 02/05/2020: Cancelled
- 02/12/2020: lab members updates and progress
- 02/19/2020: Jane presentation
- 02/26/2020: Nicole Presentation
- 03/04/2020: Picasso project talk
- 03/11/2020: Nicole: picnic day poster brainstorm, Tony developing a career development plan
- 03/18/2020: Cancelled
Wednesdays 10-11:30
- 09/25/2019: welcome back! Share what you got up to this summer and fall quarter plans. Lab business, invited speakers, discussion topic: authorship, acknowledgements, conference bias
- 10/02/2019: Picasso presentation
- 10/09/2019: Matt Presentation
- 10/16/2019: Nicole Presentation
- 10/23/2019: Haley Presentation
- 10/30/2019: Jane Paper: Two different epigenetic pathways detected in wild three-spined sticklebacks are involved in salinity adaptation
- 11/06/2019: SETAC
- 11/13/2019: Melinda Baerwald career talk
- 11/20/2019: Cancelled
- 11/27/2019: Thanksgiving Break
- 12/04/2019: Tony Paper: Among family variation in survival and gene expression uncovers adaptive genetic variation in a threatened fish
- 12/11/2019: Sara Presentation
Mondays 2-3:30
- 4/1/2019: Tony p-value interpretation and RNA-seq interpretation
- 4/8/2019: Nicole (Transgenerational experimental design)
- 4/15/2019: Jane (talk)
- 4/22/2019: Matt (talk)
- 4/29/2019: Jane (talk)
- 5/6/2019: Nicole (Lightning Journal Club)
- 5/13/2019: Lisa (Research In-progress presentation)
- 5/20/2019: Sara
- 5/27/2019 Memorial Day
- 6/3/2019 Tony (research project report)
Wednesdays @ 12pm
- 1/9/19: Organizational
- 1/16/19: Jen/Sara (Lab Safety), Jane An interplay between plasticity and parental phenotype determines impacts of ocean acidification on a reef fish
- 1/23/19: Tony DNA fragility in the parallel evolution of pelvic reduction in stickleback fish
- 1/30/19: Nicole
- 2/6/19: Sara (talk)
- 2/13/19: Lisa
- 2/20/19: Haley+Natasha+Picasso (Graduate School Rubric and Resume Workshop)
- 2/27/19: Jane (paper)
- 3/6/19: Lisa (progress report) Cross-species DGE analysis in gill epithelium from Fundulus North American killifish following a salinity challenge experiment
- 3/13/19: Matt (Intro to coalescent simulations)
- 3/20/19: Tony (talk)
Fridays @ 11am
- 9/28/18: Sara (White Abalone Talk-Red Abalone Discussion)
- 10/5/18: Lisa (Talk)
- 10/12/18: Tony Fire JC
- 10/19/18: Nicole
- 10/26/18: Elias (Talk)
- 11/2/18: Haley (Talk)
- 11/9/18: Matt (Talk)
- 11/16/18: Tony (Smoked out)
- 11/23/18: Thanksgiving, no lab meeting
- 11/30/18: Tony (data presentation)
- 12/7/18: Natasha (data presentation)
- 12/14/18: Picasso (Paper)(https://www.cell.com/trends/genetics/fulltext/S0168-9525(17)30225-1)
Tuesdays @ 12pm
- 4/3/18 - First week of Quarter
- 4/10/18 - Jane
- 4/17/18 - Elias scRNA-seq on mouse brain
- 4/24/18 - Tony Physiological and Genetic Adaptations to Diving in Sea Nomads
- 5/1/18 - Lisa F. heteroclitus genome stats
- 5/8/18 - Jeff Practice Talk for GSA
- 5/15/18 - Sara Data Presentation
- 5/22/18 - Jane The genetic architecture of target-site resistance to pyrethroid insecticides in the African malaria vectors Anopheles gambiae and Anopheles coluzzii
- 5/29/18 - Jane
- 6/5/18 - Jeff paper
Wednesday at 12pm.
- 1/10/18
- Presentation:
- 1/117/18
- Paper/presentation: Jeff KF PCB Adaptation
- 1/24/18
- Presentation: (lab cleanup?)
- 1/31/18
- Paper: (Jane presented?)
- 2/7/18
- Presentation: Sara
- 2/14/18
- 2/21/18
- Presentation (Fish cleanup)
- 2/28/18
- Paper discussion Whitehead et al 2017 review.
- 3/7/18
- Jeff Paper and Discussion here
- 3/14/18
- Elias Presentation (CPB practice)
- 3/21/18
- Lisa Presentation
Every Thursday, 2pm-3pm, Meyer 4206
Place pdf of papers in https://github.com/WhiteheadLab/Literature and link to it for "Paper Title"
-
10/12/17
- Lab Safety: Jen
- Presentation: Picasso + summer updates from the lab
-
10/19/17:
- Paper discussion: Jeff Poison Dart Frog Evolution
-
10/26/17:
- Presentation: Tony
-
11/2/17:
- WSN Practice Talk: Sara
-
11/9/17:
- Presentation: Elias
-
11/16/17:
- Paper discussion: Serena [Decoupled maternal and zygotic effects(https://github.com/WhiteheadLab/Literature/blob/master/ZakasPrePrint_ForwardGenetics.pdf)
-
11/23/17: Thanksgiving Day
-
11/30/17:
- Presentation: Jeff
-
12/7/17:
- Paper discussion: Sara [Plastic responses of bryozoans to ocean acidification] (https://github.com/WhiteheadLab/Literature/blob/master/Swezey%20ea%202017%20Plastic%20responses%20of%20bryozoans%20to%20ocean%20acidification.pdf)
-
12/14/17:
- Presentation: Jane
-
12/21/17: ?
Every other Thursday, 11am-1pm, Meyer 4206
Place pdf of papers in https://github.com/WhiteheadLab/Literature and link to it for "Paper Title"
-
4/20/17
- Presentation: Sara
- Paper Discussion: Jane
- Paper Title: Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression
-
5/4/17
- Presentation: Lisa
- Paper Discussion: Reid
- Paper Title: Contentious relationships in phylogenomic studies can be driven by a handful of genes
- See also blog post
-
5/18/17
- Presentation: Jeff
- Paper Discussion: Sara
- Paper Title: The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest
-
6/1/17
- Presentation: Reid
- Paper discussion: Jane
- Paper Title: Transgenerational transmission of environmental information in C. elegans
Every other Thursday, 9-11am, Meyer 4206
-
1/19/2017
- Presentation: Reid
- Paper Discussion: Lisa, Jane, Tony
- Paper Title: Koonin 2016, Splendor and misery of adaptation, or the importance of neutral null for understanding evolution
-
2/2/2017
- Presentation: Tony
- Paper Discussion: Reid
- Paper Title:Belleghem et al. 2017. Complex modular architecture around a simple toolkit of wing pattern genes
-
2/14/2017: NOTE: THIS IS TUESDAY, NOT THE NORMAL THURSDAY!
- Presentation: Lisa
- Paper Discussion:
- Paper Title: Meier et al. 2017. Ancient hybridization fuels rapid cichlid fish adaptive radiations
-
3/2/2017
- Presentation: Serena
- Paper Discussion: Tony
- Paper Title: Sørhus et al., 2017 Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish
-
3/16/2017
- Presentation: Yunwei
- Paper Discussion: Jane
- Paper Title: Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression
Meetings are every other Friday at 9am in Meyer 4206.
-
9/23/16
- Presentation: Summer catch up
- Paper Discussion: Reid
- Paper Title:
- Hoban et al: Finding the Genomic Basis of Local Adaptation:Pitfalls, Practical Solutions, and Future Directions
- Lowry et al: Breaking RAD: an evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation
- Notes:
-
10/7/16
- Presentation: Jane
- Paper Discussion: Lisa
- Paper Title: Conesa et al 2016. A survey of best practices for RNA-seq data analysis. Genome Biol. 2016 Aug 26;17(1):181.
- Notes:
- Extra reading (relevant, but not to focus on for lab meeting discussion):
-
10/21/16
- Presentation: Lisa
- Paper Discussion: Jeff
- Paper Title: RAD sequencing reveals within-generation polygenicselection in response to anthropogenic organic and metalcontamination in North Atlantic Eels
- Notes: Short paper (Jane short QE presentation)
- Optional paper:Random forests for genomic data analysis
-
11/4/16
- Presentation: Jeff
- Paper Discussion: Yunwei
- Paper Title: Wang et al. 2016
- Notes:
-
11/18/16
- Presentation: Reid
- Paper Discussion: Sara
- Paper Title: Ross ea. 2016. Transgenerational responses of molluscs and echinoderms to changing ocean conditions
- Notes:
-
12/2/16
- Presentation: Sara
- Paper Discussion: Jane
- Paper Title:Time- and Oil-Dependent Transcriptomic and Physiological Responses to Deepwater Horizon Oil in Mahi-Mahi (Coryphaena hippurus) Embryos and Larvae
- Notes:
-
4/21/16
- Presentation: Noah
- Paper Discussion: NA
- Paper Title: Git Training
- Paper Link:
- Notes:
-
4/28/16
- Presentation: Jeff
- Paper Discussion: NA
- Paper Title: Git Training
- Paper Link: NA
- Notes: NA
-
5/12/16
- Presentation: Jane
- Paper Discussion: Jeff
- Paper Title:
- Paper Link:
- Notes:
-
5/26/16
- Presentation: Sara
- Paper Discussion: Jane
- Paper Title:
- Paper Link:
- Notes:
-
6/9/16
- Presentation: Reid
- Paper Discussion: Sara
- Paper Title:
- Regan et al. 2016. Ambient CO2, fish behaviour and altered GABAergic neurotransmission: exploring the mechanism of CO2-altered behaviour by taking a hypercapnia dweller down to low CO2 levels
- Paper Link:
- Notes:
-
6/23/16
- Presentation: Lisa
- Paper Discussion: NA
- Paper Title:
- Paper Link:
- Notes: