docs: update citations with JMIR 2025 publication #544
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- Update CITATION.cff with complete author list and JMIR paper details - Add Citation section to README.md - Update docs/index.md with both paper and software citations
There was a problem hiding this comment.
Pull Request Overview
Updates citation references across the repository to include the newly published JMIR 2025 paper as the preferred citation for ReproSchema, replacing the previous Zenodo-only citation approach.
- Updated
CITATION.cffwith complete author list and JMIR publication as preferred citation - Added citation sections to documentation files with formatted paper reference
- Expanded README.md with comprehensive usage examples and ecosystem overview
Reviewed Changes
Copilot reviewed 3 out of 3 changed files in this pull request and generated 1 comment.
| File | Description |
|---|---|
| CITATION.cff | Added JMIR paper as preferred citation with full author list and publication details |
| README.md | Added Citation section and expanded content with usage examples and ecosystem documentation |
| docs/index.md | Updated citation instructions to prioritize JMIR paper over software DOI |
Comments suppressed due to low confidence (2)
|
|
||
| For the software itself, you can use this DOI: | ||
|
|
||
| - [doi:10.5281/zenodo.4064940](https://doi.org/10.5281/zenodo.4064940) |
There was a problem hiding this comment.
[nitpick] The formatting shows inconsistent spacing and hyphen usage compared to the previous Zenodo link format. Consider maintaining consistent list formatting.
Suggested change
| - [doi:10.5281/zenodo.4064940](https://doi.org/10.5281/zenodo.4064940) | |
| - [doi:10.5281/zenodo.4064940](https://doi.org/10.5281/zenodo.4064940) |
- Update NLM CDE link to use new URL (cde.nlm.nih.gov) - Update CEDAR Metadata Model links to use base URL
- Update visualize.md to reference main branch for demo protocol - Helps avoid rate limiting issues during link checks
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Summary
Update all citation references to include the recently published JMIR paper describing the ReproSchema ecosystem.
Changes
CITATION.cffwith complete author list and JMIR publication details as preferred citationREADME.mdwith formatted paper referencedocs/index.mdto include both the paper citation and software DOIRelated Publication
Chen Y, Jarecka D, Abraham S, et al. Standardizing Survey Data Collection to Enhance Reproducibility: Development and Comparative Evaluation of the ReproSchema Ecosystem. J Med Internet Res 2025;27:e63343. DOI: 10.2196/63343
Testing
This ensures users properly cite the academic publication when using ReproSchema in their research.