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@Clojure-Bioinformatics-Format-Parsers

Clojure Bioinformatics Format Parsers

README.md

Clojure Bioinformatics Format Parsers

Welcome to the Clojure Bioinformatics Format Parsers organization!

Currently, all code under this Org is vibe-coded slop. This includes this Readme, except this note. But I am somewhat serious about the underlying idea.

About

This organization serves to bundle development on Clojure libraries that implement parsers, readers, and writers for data formats commonly used in Bioinformatics.

Goals

Current Focus

  • Develop idiomatic Clojure libraries for parsing bioinformatics file formats
  • Provide readers and writers for common bioinformatics data formats
  • Ensure libraries are well-documented, tested, and maintained

Future Vision

A long-term vision for this project is to move towards creating and curating formal descriptions for all supported formats in machine-readable formats, including:

  • BNF Grammars
  • XSDs
  • JSON Schemas
  • Kaitai Structs

Popular repositories Loading

  1. clj-PDBx-mmCIF clj-PDBx-mmCIF Public

    Clojure parser for the PDBx/mmCIF format.

    Clojure

  2. clj-pdb clj-pdb Public

    Clojure parser for the legacy PDB format

    Clojure

  3. clj-omex clj-omex Public

    Clojure utilities for the interaction with COMBINE archives (.omex files).

    Clojure

  4. clj-gff3 clj-gff3 Public

    Clojure parser for the GFF3 format.

    Clojure

  5. clj-kegg-parser clj-kegg-parser Public

    Clojure parser for the KEGG API formats.

    Clojure

  6. .github .github Public

Repositories

Showing 6 of 6 repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

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