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BiSBi @ Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 166 18

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 41 12

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 35 11

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 26 9

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 15 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 9 2

Repositories

Showing 10 of 29 repositories
  • specmine.datasets Public

    A repository for the datasets used in R package specmine

    BioSystemsUM/specmine.datasets’s past year of commit activity
    R 0 0 0 0 Updated Dec 15, 2025
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    BioSystemsUM/DeepMol’s past year of commit activity
    Python 166 BSD-2-Clause 18 15 1 Updated Oct 10, 2025
  • PredInhib-MTB Public
    BioSystemsUM/PredInhib-MTB’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Jul 11, 2025
  • ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    BioSystemsUM/ReactEA’s past year of commit activity
    Python 9 GPL-3.0 2 2 0 Updated Jul 2, 2025
  • BioSystemsUM/drug_response_pipeline’s past year of commit activity
    Python 7 MIT 1 1 0 Updated Jun 9, 2025
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    BioSystemsUM/BioCatalyzer’s past year of commit activity
    Python 7 MIT 0 1 0 Updated May 28, 2025
  • diel_models Public

    Tool to convert generic plant GEMs to diel plant GEMs

    BioSystemsUM/diel_models’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Mar 6, 2025
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    BioSystemsUM/deepmol_case_studies’s past year of commit activity
    Jupyter Notebook 9 BSD-2-Clause 1 0 0 Updated Jan 23, 2025
  • troppo Public

    Reconstruction algorithms for Python

    BioSystemsUM/troppo’s past year of commit activity
    Jupyter Notebook 26 GPL-3.0 9 7 (1 issue needs help) 2 Updated Oct 23, 2024
  • BioSystemsUM/BioCatalyzer-CaseStudy’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 16, 2024