De Bruijn Graphs for Pangenomics: In-depth Performance Benchmarking of de Bruijn Graph-Based Tools for Read Mapping

Example code routines and scripts for running the benchmarking experiments.

Warnings:

• Energy experiments use msr-tools for energy readings, and hardware performance counts use perf event attributes. Both require root access.
• core-socket mapping of the device: lscpu --parse=CPU,SOCKET | grep -v '^#'