ValueError & AssertionError when calling events per event type

[nhansen22]

I am running SplAdder v3.0.3 and running into an error from analyze_events(). It appears the spllice graph are built totallt fine for each sample and merged correctly. Note, I had run these same samples and annotation file with v2.3.0 and it worked fine. The AssertionError for alt3, alt5 and intron retention is as follows:

analyze_events(event_type, options.bam_fnames, options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/analyze.py", line 95, in analyze_events
    (events_all, counts, verified) = verify_all_events(events_all, np.arange(len(options.samples)), bam_fnames, event_type, options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 612, in verify_all_events
    counts, verified = verify_wrapper(ev, genes, 0, gene_ids_edges, gene_ids_segs, edge_idx, sample_idx, event_type, fn_count, options, 0)[:2]
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 516, in verify_wrapper
    ver, info = verify_intron_retention(ev[i], genes[_g_idx], segments[:, s_idx].T,  np.c_[curr_edge_idx, edges[:, s_idx]], seg_pos[:, s_idx].T, options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 158, in verify_intron_retention
    assert(seg_intron.shape[0] > 0)
AssertionError

Then for the exon skip events I get a ValueError:

analyze_events(event_type, options.bam_fnames, options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/analyze.py", line 95, in analyze_events
    (events_all, counts, verified) = verify_all_events(events_all, np.arange(len(options.samples)), bam_fnames, event_type, options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 612, in verify_all_events
    counts, verified = verify_wrapper(ev, genes, 0, gene_ids_edges, gene_ids_segs, edge_idx, sample_idx, event_type, fn_count, options, 0)[:2]
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 512, in verify_wrapper
    ver, info = verify_exon_skip(ev[i], genes[_g_idx], segments[:, s_idx].T,  np.c_[curr_edge_idx, edges[:, s_idx]], options)
  File "/usr/local/lib/python3.8/site-packages/spladder/alt_splice/verify.py", line 249, in verify_exon_skip
    info[4] = counts_edges[idx, 1]
ValueError: setting an array element with a sequence.

Please advise