- subject: passed in through subjects.tsv
- session: hard-coded as one variable
- task/acquisition/recording: None
We should also make sure the entire workflow is BIDS-compliant with "derivatives". The issue is that derivatives such as robustfov and acpcdetect should be stored separately, and there are a lot of sidecar files that need to be written, so we need functions to do that.
Documentation on file format
Need to also document that we "Requires .nii files to be BIDS-compliant."