An object to be cloned is not in the closed state.

[markwoon]

I am getting this while trying to compile a WDL script:

  [error] InvalidState: An object to be cloned is not in the closed state. Successfully cloned from project: None
        at com.dnanexus.exceptions.DXAPIException$ApiExceptionClass$4.generateException(DXAPIException.java:51)
        at com.dnanexus.exceptions.DXAPIException.getInstance(DXAPIException.java:125)
        at com.dnanexus.DXHTTPRequest.requestImpl(DXHTTPRequest.java:383)
        at com.dnanexus.DXHTTPRequest.request(DXHTTPRequest.java:246)
        at com.dnanexus.DXAPI.projectClone(DXAPI.java:23945)
        at dx.api.DxApi.$anonfun$projectClone$1(DxApi.scala:621)
        at dx.api.DxApi.callObject(DxApi.scala:424)
        at dx.api.DxApi.projectClone(DxApi.scala:621)
        at dx.api.DxApi.cloneDataObject(DxApi.scala:1115)
        at dx.compiler.ApplicationCompiler.createRunSpec(ApplicationCompiler.scala:263)
        at dx.compiler.ApplicationCompiler.apply(ApplicationCompiler.scala:553)
        at dx.compiler.Compiler$BundleCompiler.maybeBuildApplet(Compiler.scala:357)
        at dx.compiler.Compiler$BundleCompiler.$anonfun$apply$1(Compiler.scala:471)
        at scala.collection.IterableOnceOps.foldLeft(IterableOnce.scala:646)
        at scala.collection.IterableOnceOps.foldLeft$(IterableOnce.scala:642)
        at scala.collection.AbstractIterable.foldLeft(Iterable.scala:926)
        at dx.compiler.Compiler$BundleCompiler.apply(Compiler.scala:441)
        at dx.compiler.Compiler.apply(Compiler.scala:494)
        at dxCompiler.Main$.compile(Main.scala:538)
        at dxCompiler.Main$.dispatchCommand(Main.scala:791)
        at dxCompiler.Main$.main(Main.scala:922)
        at dxCompiler.MainApp$.delayedEndpoint$dxCompiler$MainApp$1(Main.scala:927)
        at dxCompiler.MainApp$delayedInit$body.apply(Main.scala:926)
        at scala.Function0.apply$mcV$sp(Function0.scala:39)
        at scala.Function0.apply$mcV$sp$(Function0.scala:39)
        at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:17)
        at scala.App.$anonfun$main$1(App.scala:76)
        at scala.App.$anonfun$main$1$adapted(App.scala:76)
        at scala.collection.IterableOnceOps.foreach(IterableOnce.scala:563)
        at scala.collection.IterableOnceOps.foreach$(IterableOnce.scala:561)
        at scala.collection.AbstractIterable.foreach(Iterable.scala:926)
        at scala.App.main(App.scala:76)
        at scala.App.main$(App.scala:74)
        at dxCompiler.MainApp$.main(Main.scala:926)
        at dxCompiler.MainApp.main(Main.scala)

I'm using 2.13.0.

I can compile (the same scripts) to one project but not another.

Any idea what the problem might be?

[markwoon]

And now when I try running the compiled app on the project that it was successfully compiled on, I'm getting:

  Traceback (most recent call last):
    File "/home/markwoon/.local/lib/python3.10/site-packages/dxpy/scripts/dx.py", line 3116, in run_one
      dxexecution.wait_on_done()
    File "/home/markwoon/.local/lib/python3.10/site-packages/dxpy/bindings/dxjob.py", line 332, in wait_on_done
      raise DXJobFailureError(err_msg)
  dxpy.exceptions.DXJobFailureError: Job has failed because of InputError: An input or bundled dependency could not be cloned into the project: InvalidState: A linked object to be cloned is not in the closed state. Successfully cloned from project: None