I was able to recreate an issue with post-adaption boundary mesh face orientations. This was previously seen in the capVol test adaptation. After adaptation, the mesh faces created on each of the model faces are not oriented in the same direction.
Attached is the input files used to replicate the issue on a simple cube with a Shock adaptation. The test code can be found as adaptOrientation.cc in the test folder of the zg/faceFlip branch. Usage is: ./a.out capCubedmg.dmg capCube_before.smb
cubeInput.tar.gz